1) Edit the registry - Find the key in the following location for the Altiris Agent. It should be similar to this (but may be a guid folder instead) HKEY_LOCAL_MACHINE \ SOFTWARE \ Microsoft \ Windows \ CurrentVersion \ Uninstall \AltirisAgent
You need to add a REGDWORD entry called SystemComponent and set the value to 1.
2)You could just try redeploying the agent with the /noaddremoveprograms switch
By default, most newer versions don't show up, but these are two possible ways around your issue.
You can also check the document http://www.symantec.com/docs/HOWTO2001