Hi,
Thank you for posting in Symantec community.
I would be glad to answer your query.
Q. Is there a way in SEPM to create a SEP package for servers?
--> Yes, you can create custom packages as per the business requirements.
Check this article.
Creating custom client installation packages in the Symantec Endpoint Protection Manager consol
http://www.symantec.com/business/support/index?page=content&id=TECH102817