The CurrentVersion folder is a junction to the actual version number of the installed SEP client, in your case 12.1.2015.2015.
Make a change in the 12.1.2015.2015 folder and it is reflected in the CurrenVersion folder, it's not a duplicate, it's the same file referenced twice because of the junction.
#EDIT#
You can confirm this by running the below command:
junction.exe -s "C:\ProgramData\Symantec\Symantec Endpoint Protection"
Using the junction tool from MS below
On my machine, it shows the below results:
\\?\C:\ProgramData\Symantec\Symantec Endpoint Protection\CurrentVersion: JUNCTION
Substitute Name: C:\ProgramData\Symantec\Symantec Endpoint Protection\12.1.2015.2015.105
#EDIT2#
This is also why the CurrentVersion folder has a little shortcut icon on it!