Any Exclusion for FNP server(File server) from SEPM....
no there is no Exclusion for specify file server
Windows Antivirus Exclusion Recommendations (Servers, Clients, and Role-Specific)
http://support.microsoft.com/kb/822158
can we exclude the ftp service from sepm,is it possible..?
Not possible but you can exclude FTP folder.
Edit
https://www-secure.symantec.com/connect/forums/sepm-exclude-process