You have two options:
Symantec offers a product specifically for this:
Protection Engine for NAS
http://www.symantec.com/protection-engine-network-attached-storage/
Or you could use SEP. You would need to create a maps to the drives then use SEP and create a custom scan within SEP to scan only those drives. This doesn't offer real-time protection though, only scanning.
Protection Engine for NAS would be real-time scanning