Ted is correct older version of Cleanwipe had some issues but even cleanwipe gets updated. Only reason it should not be run on the server is that it will remove SEP and SEPM thats it,
It actually doesn't remove any other Symantec apps like Backup exec etc. after running cleanwipe install LU and repair BE it should be fine.
Also only Cleanwipe should not be run throught RDP and as any other program always latest one should be used.