billinma,
The Symantec Endpoint Protection Manager does not have any built-in protection technologies. It is simply a manager for SEP clients and nothing more.
You will need to install the Symantec Endpoint Protection client onto the server in order for it to be protected. Once installed, you can initiate a full system scan from the client's GUI by double-clicking SEP's gold shield in the system tray, clicking Scan for Threats, and clicking Run Full Scan.
A scan can also be initizlied on a client from the SEPM by right-clicking a client, choosing Run Command on Client, and choosing one of our scan options. NOTE: The client will not receive the command until the next time it checks into the SEPM. (This will vary with whatever you have set the heartbeat interval to.)
Regards,
Jamaes