Are these two SEPMs part of the same site, replicating partners, or was SEPM_B created using SEPM_A's Recovery File?
If none of the above are true, then we're talking about entirely independent sites with neither knowledge of each other nor matching Management Server Certificates. This means moving by MSL will not work, and you'll have change the sylink files on the clients you want talking to SEPM_B, to repoint them at SEPM_B.
For example:
http://www.symantec.com/docs/HOWTO81109