I haven't had our server team check the physical servers yet but I have a list of servers that I used the deployment wizard to push SEP packages to replace McAfee on these servers. Out of 1k+ servers, when I search in the group that they were being put into, I find 775 servers which include new servers that were built with SEP installed. Leaves me a difference of almost 500 servers. When I compare the list of the machines that the deployment wizard said were successfully pushed the package I can identify the machines. Connecting to them again via the deployment wizard shows them only running McAfee EPO though I will admit I only checked this on a handful. I haven't checked the numbers today and I plan on both having the Server team verify by querying for a running smc.exe process as well as connecting to a larger pool of machines via the deployment wizard.
This was previously tested, was successful and over half the machines are showing in the console most of which, if not all, have already been rebooted. It is these 500 machines that concern me. So the deployment wizard should show them running SEP? They are not reporting to the SEPM console.