Well,
The connection from the Discover server to the file server is standard SMB protocol use.
The information kept on the Discover server is unreadable, and it is transfered using secure connection to the Enforce server. The Enforce server, encrypts the data and stores it in its database.
If the information is kept on your file server unprotected, and every user can reach that data, I can't see the difference when using the Vontu Discover. From my point of view, it is better to know that the data is there and act accordingly than not using Discover scans.
If you will be more specific, I will be able to give you a more direct response.
Kind Regards,
Naor Penso