If you are using Pull mode (as I think) and heartbeat is at 3 hours, I don't think this traffic has something to do with the "normal" communication.
Perhaps something is wrong on the SEPM. E.g., while the SEPM is building the client's delta files, the clients are in an accelerated heartbeat of 1 minute to check when the SEPM is ready.
Just a guess, but perhaps the SEPM is not able to finish the building of definition files, and the clients are waiting in an infinite loop.
Please check if the SEPM has current definitions and the clients are properly updating. If there is some issue, the definitions on the SEPM may be corrupted.