I cannot erase the clients as we have out AD structure imported into SEPM.
Brian, I did search for the client and it did show up twice. In the AD OU where the machine is actually located it shows up as client version unavailable, but in another OU it shows up as connected. The issue now is I sync'd the OU where the client was showing up as connected and because the machine was not in that AD OU it removed it from SEPM and now when I search the only one that is showing up is the one with the client version unavailable.
When I open the client and go to Help troubleshooting, it also shows it as being in the incorrect OU.