Well the "nightmares" were all over the place. I had to start over several times but finally got the system installed correctly...except for this one issue. The original issues included, but were not limited to, bad permissions ad missing ACLs on the driversDB folder and all drivers folders. Missing and bad permissions in the registry where the MSIs register themselves and silverlight not being recognized so the view for managing computers wasn't right. I did try repairs with no luck and even tried repairing the activity center with no luck as well. I finally uninstalled everything, deleted the DB and started over and now things are looking better.
Of course I still don't see any subnets. I have tried to repair the Activity Center and it didn't seem to do any good. I can click on the subnets title and the page on the right appears but is empty. I can manually create a subnet, or at least go through the motions, but when I go back to the page there is nothing there but there are no errors in the logs at all. Very strange indeed.