We found the policy where the option was turned on... As mentioned in your first reply the computers booting up are not in the filter of the policy, which makes it extra weird. I disabled the option to wake up the computers in the policy and I'm sure everything will be fine now.
For those interested, this is the query I used to find the name of the policy:
SELECT DISTINCT pol.Name AS [Policy], pol.[guid], pol.Attributes
,package.[Package Location]
,package.ProgramName AS [Commandline Type]
,package.CommandLine
,detrule.Name AS [Detection Rule]
,CAST(detrule.InventoryRuleXml AS NVARCHAR(MAX)) AS [Detection Rule Detail]
,tar.Name as [Resource Target]
FROM vNonResourceItem pol
LEFT JOIN vResourceTargetUses rtu
ON rtu.ItemGuid = pol.Guid
LEFT JOIN vNonResourceItem tar
ON tar.Guid = rtu.ResourceTargetGuid
LEFT JOIN (SELECT pack.PackageId, pack.[Package Location], ir.ParentItemGuid, prog.Name AS ProgramName, prog.CommandLine
FROM ItemReference ir
JOIN SWDPackage pack
ON pack.PackageId = ChildItemGuid
AND _Latest = 1
LEFT JOIN SWDProgram prog
ON prog.PackageId = pack.PackageId) package
ON pol.Guid = package.ParentItemGuid
LEFT JOIN (SELECT ir.ParentItemGuid AS PolicyGuid, iri.Name, irule.InventoryRuleXml
FROM ResourceAssociation ra
JOIN ItemReference ir
on ir.ChildItemGuid = ra.ParentResourceGuid
JOIN vRM_Inventory_Rule_Item iri
ON iri.Guid = ra.ChildResourceGuid
JOIN Inv_Inventory_Rule irule
ON irule._ResourceGuid = iri.Guid
WHERE ra.ResourceAssociationTypeGuid = '6CCB60F8-E88D-4BA2-959F-4B531C8C5FCD') detrule
ON detrule.PolicyGuid = pol.Guid
WHERE pol.ClassGuid IN ('2D3A170E-5028-4570-BA0C-3DB775CB8BDE','212E1D10-4905-4CDB-A90A-81AE77E9DE9A')
and pol.guid = '13f87bbf-cc0d-4410-8b71-c9bc40597c7e' --insert your guid here