Download Insight is enabled in the policy.
I'm testing with 12.1.2015.2015. SEPM has been also updated from 11 to this 12.1 version and packages were exported for a deployment (Full protection for clients).
Tamper protection is enabled in the policy.
I have everything enabled in the policy except for Lotus Notes Auto-Protect as we don't use Lotus.
Machines were rebooted after the upgrade and many times, since upgrade was done few weeks ago and machines are turned off daily.