OK, I think those links helped some. Let me present a scenario and hopefully the answers will help me totally get it.
1. Computer needs patches and has a maintenance window of 02:00-04:00
2. Computer starts and finishes all patches by 02:45
3. Computer reboots
4. Altiris now determines that it needs more patches (what does this? Is it the Microsoft Vulnerability Analysis?)
5. Patches are downloaded
6. Its still ~02:45, so its still in its defined maintenance window. When will these new patches start to install? Immediately or is it based on some policy?