I believe you mis interpeted the node count support for a site server.
o A single Notification Server can manage up to 500 Site Servers
o A single Notification Server can manage up to 5,000 Packages
o Can deploy100 Site Servers with Package Services in 18 Hours
A Site Server with Task Services can be configured to register up to 5,000 endpoints with a supported desktop operating system and up to 10,000 Registered Endpoints with a supported server class operating system.
Consider adding an additional Site Server with Task Services enabled for every 2,500-5,000 endpoints