Thanks guys.
looking at around initially 30,000 clients, have automated most server roles with SCCM, was really hoping this one could be done too, hence the Quarantine Server, however no major configurations will be made on the Quarantine Server, so i guess it will just sit there (for now) Disapointing how the console is only 32 bit.
The solution for automating the SEPM including configurations is probably using some templating technology, but the overhead management of that would'nt be worth it.