There is no magic bullet. This depends on,
1) The license agreements for the control software
2) Whether the software in question has license protection in-built that's designed to detect if it's been deployed in a 're-image' scenario
Some control software will allow re-imaging in a DR (disaster recovery) scenario, others will require that you re-input your license key, but sometimes you can be forced to completely re-register the license. It just depends on the software. And whilst you can often 'cheat' the licensing with a little know-how, you will almost certainly be in violation of the license terms if you do.
You have to inventory each of these critical pieces of software, check their license conditions, and licensing process. Then form a DR process accordingly, which may if you are lucky mean that you can simply re-image the computer with a DR ghost backup image of that machine.
Kind Regards,
Ian./