Hi Chris,
Since DNS servers can be configured per host (scanner), may be you can configure each scanner with its local DNS server and have the local DNS server resolve the LDAP source to an IP address that is local to the specific scanner.
Another way could be to configure (using either the GUI or the CLI as admin) invalid routes to LDAP servers on specific scanners that you don't want those scanners to use. If the scanners cannnot reach (due to invalid route) to those LDAP servers, they will use the ones from the list that can be reached.
I have not tested these, but I don't readily see any reason they would not work.
Hope this helps.
Regards,
Adnan