Hi,
If you're using Enterprise Edition, just ensure that the database maintenance tasks are activated. Indeed you can run at the same occasion the truncate of the sem5.log in the same places.
Admin/ Servers/ Point to localhost and you'll have the quick shortcut tasks to shrink the sem5.log. By going on edit Database properties, you could check the boxes for automatic truncation of the database log transaction file and the rebuild of the indexes.
In addition as you faced a disk space issue for a certain amount of time, you can also involve our support to ensure your conf.properties has not been altered by the disk space issue (known side effect when it happens).
Kind regards,
A. Wesker