Hi Balaji,
Many thanks for the post. The remediation capabilities built into SEP are very good but special actions are still needed against certain threats. Trojan.Kotver is one of those. Here's an article:
Kovter malware learns from Poweliks with persistent fileless registry update
Isolate the infected computers and run the fixtool, carefully following the directions from the write-up. (If the tool is not renamed, the threat may not be removed.)
Trojan.Kotver Removal Tool
Hope this helps! Please do keep the thread up-to-date with your progress, or mark it solved if you have received your answer.
With thanks and best regards,
Mick