I just did 26 of 28 servers with no issues.
Only one has a real issue and I blame the server for the most part.........
The other was a user protection setting issue - turned off user control and it went fine.
So technically, 27 of 28 worked well, one fluke.
About a dozen clients updated so far as well - no issues.
I wonder if you have some corruption in the package or import when SEM was updated??
Might want to delete the new packages, re-import manually, go through the settings again and give it a shot..............
Just a thought.......... corruption happens.
We just has a MS AD group policy corrupt on us - BLEW AWAY all of our domain browser and workstation security and settings! OUCH!!!!!!!!!!!!!!!!!!!!!